\select@language {english}
\contentsline {chapter}{\numberline {1}Introduction}{3}{chapter.1}
\contentsline {chapter}{\numberline {2}QuickStart Procedure}{5}{chapter.2}
\contentsline {section}{\numberline {2.1}Downloading the model source code and required data files}{5}{section.2.1}
\contentsline {section}{\numberline {2.2}Making a default run on a 64-bit Linux system}{6}{section.2.2}
\contentsline {section}{\numberline {2.3}Running the model on IBM/AIX Platforms}{7}{section.2.3}
\contentsline {chapter}{\numberline {3}Directory Structure}{9}{chapter.3}
\contentsline {section}{\numberline {3.1}Working Directory (\emph {workdir})}{9}{section.3.1}
\contentsline {section}{\numberline {3.2}Model Directory (\emph {modeldir})}{9}{section.3.2}
\contentsline {section}{\numberline {3.3}Data Directory (\emph {datadir})}{10}{section.3.3}
\contentsline {chapter}{\numberline {4}Run Control Parameters: The Namelist Input File}{11}{chapter.4}
\contentsline {section}{\numberline {4.1}Example Namelist Input Files}{11}{section.4.1}
\contentsline {section}{\numberline {4.2}Explanation of Valid Namelist Parameters}{12}{section.4.2}
\contentsline {chapter}{\numberline {5}Structure of Output History Files}{25}{chapter.5}
\contentsline {section}{\numberline {5.1}NetCDF Output Files (\emph {netCDF})}{25}{section.5.1}
\contentsline {section}{\numberline {5.2}Primary and Secondary History Files}{25}{section.5.2}
\contentsline {chapter}{\numberline {6}Saving Diagnostic Fields}{27}{chapter.6}
\contentsline {section}{\numberline {6.1}Table of Available Diagnostics}{27}{section.6.1}
\contentsline {section}{\numberline {6.2}Saving Fields/Arrays from the Source}{27}{section.6.2}
\contentsline {chapter}{\numberline {7}Model Source Code}{29}{chapter.7}
\contentsline {section}{\numberline {7.1}The Academic License Agreement}{29}{section.7.1}
\contentsline {section}{\numberline {7.2}Source Code Flow Diagram}{29}{section.7.2}
\contentsline {section}{\numberline {7.3}Modifying the Source Code}{29}{section.7.3}
\contentsline {chapter}{\numberline {8}The Make/build process: compile and link}{31}{chapter.8}
\contentsline {chapter}{\numberline {9}Version Benchmark Test Runs}{33}{chapter.9}
\contentsline {chapter}{\numberline {10}Trouble Shooting}{35}{chapter.10}
\contentsline {section}{\numberline {10.1}Problems Downloading the Model and Data}{35}{section.10.1}
\contentsline {section}{\numberline {10.2}Problems with the Build Process}{35}{section.10.2}
\contentsline {section}{\numberline {10.3}Namelist Input Problems}{35}{section.10.3}
\contentsline {section}{\numberline {10.4}Debugging Model Runs}{35}{section.10.4}
\contentsline {section}{\numberline {10.5}Platform Porting}{35}{section.10.5}
\contentsline {section}{\numberline {10.6}Performance Issues}{35}{section.10.6}
\contentsline {section}{\numberline {10.7}Contact Model Support Group at HAO}{35}{section.10.7}
\contentsline {chapter}{\numberline {11}Glossary}{37}{chapter.11}
\contentsline {chapter}{\numberline {12}Indices and tables}{39}{chapter.12}
\contentsline {chapter}{Index}{41}{section*.55}