#! /bin/csh # # This is an example job script to configure, build, and execute a tgcm # model on a Linux system. # # To use: # 1) Set script variables below. # 2) Copy to a large working directory on the target machine. # 3) Assuming this script is called "jobfile", then: # To run interactively (in background), use "jobfile >&! jobfile.out &" # # See http://download.hao.ucar.edu/pub/tgcm/doc/userguide for more information. # If you need to customize the configuration beyond the shell vars here, # add or change options to the tgcm_config call below. # #- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # USER EDIT BATCH JOB (LSF) RESOURCES (for Linux lightning cluster) # #BSUB -J glbmean # job name #BSUB -x # exclusive use of the node #BSUB -n 4 # number of MPI tasks #BSUB -q regular # queue (premium and regular are available) ##BSUB -q debug # debug queue is available during the day (30 min limit) #BSUB -o glbmean.%J.out # stdout filename #BSUB -e glbmean.%J.out # stderr filename #BSUB -N # send mail when job finishes #BSUB -u $LOGNAME@ucar.edu # email address #BSUB -W 3:00 # wallclock limit (hh:mm) (3 hrs for prem or reg) ##BSUB -W 0:30 # 30 min limit for debug queue # #- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # USER EDIT SHELL VARIABLES (for batch and interactive jobs) # # model: Desired model name (Required. Use ListModels to see valid models) # wrkdir: User's working directory (default is `pwd`, i.e., the cwd) # usr_srcdirs: List of user source directories (optional) # input: Namelist input file (if not given, a default will be created) # output: Name of stdout file relative to the wrkdir (default is $model.out) # tgcmroot: Root directory of distribution (default env var $TGCMROOT) # tgcmdata: Root directory containing input data files (default $TGCMDATA) # execdir: Directory in which to build and execute # (default is $wrkdir/$model-$os) # utildir: Directory containing config script and needed utilities # (default is $tgcmroot/$model/scripts) # # Model output history files will be written to $execdir. # set model = glbmean set wrkdir = . #set wrkdir = $model-$$ #set input = $model.inp #set output = $model.out # relative to wrkdir #set usr_srcdirs = modsrc #set tgcmroot = $TGCMROOT #set tgcmdata = $TGCMDATA #set execdir = $model-linux #set utildir = $TGCMROOT/$model/scripts set debug = 0 # # USER SHOULD NOT HAVE TO EDIT BELOW THIS LINE # (except maybe to customize tgcm_config below) #- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # set mycwd = `pwd` echo " " echo "${0}:" echo " Begin execution at `date`" echo " Current working directory: $mycwd" echo " System: `uname -a`" echo " Log name: $LOGNAME" set userguide = http://download.hao.ucar.edu/pub/tgcm/doc/userguide # # Model name is required: # if (! $?model) then echo "" ; echo ">>> Please set desired model (e.g., 'tiegcm', 'timegcm', 'glbmean')" echo " See $userguide for more information." exit 1 endif echo " Model: $model" # if (! $?wrkdir) set wrkdir = `pwd` # default working dir is cwd if (! $?tgcmroot) set tgcmroot = "" if (! $?tgcmdata) set tgcmdata = "" if (! $?usr_srcdirs) set usr_srcdirs = "" if (! $?hres) set hres = 5.0 if (! $?vres) set vres = 0.5 if (! $?mpi) set mpi = "" # # Set utility dir from shell var $tgcmroot, or env var $TGCMROOT: # (must contain Abspath, MakeNamelist, MkLogs, etc) # if (! $?utildir) then if ($tgcmroot != "") then # shell var from above (if set, trumps env var) set utildir = $tgcmroot/$model/scripts else if ($?TGCMROOT) then # env var set utildir = $TGCMROOT/$model/scripts else echo "" ; echo ">>> WARNING: cannot determine utility directory." echo "" ; echo "Please set either shell var tgcmroot, or env var TGCMROOT" echo " such that the directory tgcmroot/$model/scripts contains" echo " the configuration script tgcm_config, and other needed utilities." echo " See $userguide for more information." echo "" ; exit 1 endif else # user provided utildir -- it must exist if (! -d $utildir) then echo ">>> Cannot find utility directory $utildir" && exit 1 endif endif if (! -x $utildir/Abspath) echo ">>> Cannot find command $utildir/Abspath" set utildir = `perl $utildir/Abspath $utildir` # full path to utildir echo " Utildir = $utildir" # set wrkdir = `perl $utildir/Abspath $wrkdir` # full path to wrkdir echo " Wrkdir = $wrkdir" # # Set exec directory if necessary (wrkdir/model-os): # if (! $?execdir) then set os = `uname -s | tr "[A-Z]" "[a-z]"` set execdir = $wrkdir/$model-$os # if does not exist, will be created by config endif set execdir = `perl $utildir/Abspath $execdir` # full path to execdir echo " Execdir = $execdir" if (! -x $utildir/tgcm_config) \ echo ">>> WARNING: Cannot find config script $utildir/tgcm_config" # # Configure (pass shell vars to tgcm_config): # See http://download.hao.ucar.edu/pub/tgcm/doc/userguide for more # options to tgcm_config. # perl $utildir/tgcm_config -model=$model -wrkdir=$wrkdir -execdir=$execdir \ -tgcmroot=$tgcmroot -tgcmdata=$tgcmdata -usr_srcdirs=$usr_srcdirs \ -utildir=$utildir -hres=$hres -vres=$vres -mpi=$mpi -debug=$debug || \ echo ">>> ${0}: Error from tgcm_config" && exit 1 # # Make default namelist input if not provided by user: # if (! $?input) then set input = \ `perl $utildir/MkNamelist -model=$model -hres=$hres -vres=$vres` || \ echo "${0}: Error from MkNamelist: fileout = $input" && exit 1 echo "Made default namelist input file $input" else echo "Using user provided namelist input file $input" endif set namelist = `perl $utildir/Abspath $input` if (! -e $namelist) then echo "${0}: Cannot find namelist input file $namelist" && exit 1 endif # # Build model in execdir: # cd $execdir || echo ">>> Cannot cd to execdir $execdir" && exit 1 echo "" ; echo "Begin building $model in `pwd` at `date`..." gmake -j4 || echo ">>> Error return from gmake" && exit 1 echo "End building $model at `date`..." cd $mycwd # return to original cwd # # Default stdout file is $model.out in the wrkdir: # if (! $?output) then set output = $wrkdir/$model.out else set output = `perl $utildir/Abspath $wrkdir/$output` endif # # Execute from execdir: # cd $execdir || echo ">>> Error from cd to execdir $execdir" && exit 1 echo "" ; echo "Executing model $model from `pwd` at `date`" echo "Model output will go to $output" $execdir/$model < $namelist >&! $output || \ echo ">>> ${0} Execution of $execdir/$model FAILED at `date`" && \ echo "See output in $output" echo "Run of $model completed at `date`" # # Separate output files by MPI task: # (we are still in $execdir, but $output contains full path to $wrkdir) # #perl $utildir/MkLogs $output || \ # echo ">>> ${0}: Error from $execdir/MkLogs on output $output" # # Prepare and submit mss dispose job (MkDispose will make and submit # dispose.job only if dispose.csh exists in execdir, i.e., model was # run with DISPOSE=2): # perl $utildir/MkDispose -submit # cd $mycwd # return to original cwd echo "" ; echo "${0}: Completed execution at `date`" exit 0